PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 487aa    MW: 53107.3 Da    PI: 7.6863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04880.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12304349454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI +L
  KHN04880.1 304 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 349
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-19172IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.193300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.69E-15303354No hitNo description
SuperFamilySSF474591.31E-18303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-19304369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10304349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
GLPGQAFFNS TPVWVTGSDR LSASACERAR QGHMFGLQTL VCIPSANGVV ELGSTELIFQ  60
NPDLMNKVKV LFNFSNNNFD MGSSWPATSA DQGENDPSSL WLSDPEVRDS INTVAATPSV  120
SVPAQTQGIS ISKTMQLESS IQTPGSSTLT ETPSSIHAIP QNQSVFSREL NFSEYGFDPK  180
TGNNQNHHSL KPESGEILSF GESKRTSYGG VNGNSNSNSH FFSGQSPFVA AADENTNKNN  240
INNNGKTKSP NSRGSNDDGM LSFTSGVILP ASNASVVKDP VVEPEKRPRK RGRKPANGRE  300
EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG DAISYITELK SKLQTLESDK  360
DGMQKQLEGV KKELEKTTEN VSSNHAGNSS SCNNNNKLSN QKLIDVLEMD VKILGWDAMI  420
RIHCSKKNHP GARLLTALME LDLDVHHANV NLVNDMTMLQ ATVKMGSRFY TQEQLRAALA  480
AKVGDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-24174121194Transcription factor MYC3
4rqw_B3e-24174121194Transcription factor MYC3
4rs9_A3e-24174121194Transcription factor MYC3
4yz6_A3e-24174121194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285293KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534274.20.0PREDICTED: transcription factor MYC2-like
SwissprotQ392041e-137MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0B2P6C90.0A0A0B2P6C9_GLYSO; Transcription factor MYC2 (Fragment)
STRINGGLYMA01G02251.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-119bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]